Suchergebnisse

This is the final version. Available from Elsevier via the DOI in this record. ; All data held in the form of draft and final ontologies produced by the Ontologies CoP are accessible online on public repositories managing versioning—mainly in GitHub repositories. Final versions of the ontologies are published with a cc-by license. ; Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams. ; National Science Foundation (NSF) ; Biotechnology and Biological Sciences Research Council (BBSRC) ; Biotechnology and Biological Sciences Research Council (BBSRC) ; Biotechnology and Biological Sciences Research Council (BBSRC) ; Biotechnology and Biological Sciences Research Council (BBSRC) ; Biotechnology and Biological Sciences Research Council (BBSRC) ; Biotechnology and Biological Sciences Research Council (BBSRC) ; Engineering and Physical Sciences Research Council (EPSRC) ; French National Research Agency ; European Union ; European Union Horizon 2020

This work was supported by the Potato Council and The Scottish Government (D.E.L. Cooke, A.K. Lees, I. Hein, E.M. Gilroy, E. Randall, J.N. Squires, P.R.J. Birch & R.A. Bain), the Gatsby Charitable Foundation (S. Kamoun, L.M. Cano, S. Rafaelle, G.J. Etherington & R.A. Farrer), a Marie Curie IEF (contract 255104) to S. Rafaelle, the Dutch Ministry of Agriculture, Nature and Food Quality to V.G.A.A. Vleeshouwers and the FP6 program BioExploit Food-CT-2005-513959 supported M.A. Pel. A BBSRC/RESAS CRF grant also supported D.E.L. Cooke, E. Gilroy, P. Birch, S. Kamoun & I.Hein. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. ; Peer reviewed ; Publisher PDF

Funded by: Scottish Government Biotechnology and Biological Science Research Council (BBSRC). Grant Number: BB/G014272/1 Acknowledgements The authors thank the British Society for Neuroendocrinology (BSN) for providing the Student Laboratory Experience Grant to FMT. This work was further supported by the Scottish Government (LMT, AWR and PJM) and the Biotechnology and Biological Science Research Council (BBSRC) grant number BB/G014272/1 (GH, AWR and PJM). We also thank Donna Wallace and the animal house staff for their excellent help with the animal studies. The authors have no conflicts of interest to declare ; Peer reviewed ; Publisher PDF

Funded by BBSRC . Grant Number: BB/L009951/1 Scottish Government Food, Land and People program Israel Science Foundation . Grant Numbers: 1349/13 , 1339/13 United States-Israel Binational Science Foundation (BSF) ; Peer reviewed ; Publisher PDF

Funding Information: The authors would like to express their sincere thanks to Director, ICAR-NBFGR for providing facilities to carry out this study. The work was carried out with financial support from Department of Biotechnology, Ministry of Science and Technology, Government of India (Grant No. BT/IN/Indo-UK/BBSRC-qua/38/MSS/2015-16), and UK BBSRC, UK ESRC and UK Aid under contract BB/N005058/1. The authors would also like to express their gratitude to Dr. Kuldeep K. Lal, Director, ICAR-NBFGR and Dr. J.K. Jena, DDG (Fy. Sc.), ICAR for their support, guidance and encouragement. The technical assistance by Dr. M.K. Yadav, Mr. Ravindra and Mr. Uday Kumar is also acknowledged. Publisher Copyright: © 2020, The Author(s). ; Peer reviewed ; Publisher PDF

The project was supported by grants from the Biotechnology and Biological Sciences Research Council (BBSRC BB/N01720X/1 and BB/N016742/1). The research is based on data from experiments funded by the Scottish Government as part of the 2011-2016 commission, Agriculture, and Horticulture Development Board (AHDB) Beef & Lamb, Quality Meat Scotland (QMS) and Department for Environment Food & Rural Affairs (Defra). ; Peer reviewed ; Publisher PDF

We thank Donna Wallace and the animal house staff for their help with the animal studies. We thank Pat Bain for help in preparing the figures. This work was supported by the Biotechnology and Biological Science Research Council (BBSRC) grant number BB/K001043/1 (G.H., A.W.R., P.N.S., P.J.Mc. and P.J.M.) and the Scottish Government (A.W.R., L.M.T., C.D.M. and P.J.M.). ; Peer reviewed ; Publisher PDF

Acknowledgements Funding for work in the laboratory of PB was supported by Scottish Government Rural and Environment Science and Analytical Services Division, BBSRC (grant BB/M001504/1), British Society for Neuroendocrinology (research visit grant to IP). Work in the laboratory of SS was supported by a grant from the DFG (Ste 331/8-1). We thank Siegried Hilken, Marianne Brüning, Dr. Esther Lipokatic-Takacs and Dr. Frank Scherbarth at UVMH for technical assistance. We thank Graham Horgan of Bioinformatics, Statistics Scotland for assistance with some of statistical tests. ; Peer reviewed ; Publisher PDF

The authors would like to acknowledge the funding provided by the European Union Seventh Framework Programme [FP7/2007–2013] (NICHE; grant agreement 289384) (LDF). LDF also acknowledges the funding provided by the São Paulo Research Foundation (FAPESP - grant #2015/26989-4). AM was partially funded by the UK Biotechnology and Biological Research Council (BBSRC), through grant BB/N015711/1. LC would like to acknowledge Maria Carmen Romano, Jean Hausser, Marco Cosentino Lagomarsino, Jean-Charles Walter and Norbert Kern for early discussions on this work, and the CNRS for having granted him a "demi-délégation" (2017–18). We would like to dedicate this work in memory of Maxime Clusel and Vladimir Lorman. ; Peer reviewed ; Publisher PDF ; Publisher PDF

ACKNOWLEDGMENTS We are grateful to Brian Morgan and Elizabeth Veal for insightful discussions, Mélanie Ikeh for experimental assistance, and Scott Moye-Rowley (University of Iowa) for the gift of the anti-Cap1 antibody. This work was funded by the NIHR Newcastle Biomedical Research Centre (I.K.), a BBSRC DTG studentship (M.J.P.), the Wellcome Trust (grants 089930 and 097377 to J.Q. and 080088 and 097377 to A.J.P.B.), the BBSRC (grants BB/K016393/1 to J.Q. and BB/F00513X/1 and BB/K017365/1 to A.J.P.B.), the European Research Council (STRIFE Advanced grant ERC-2009-AdG-249793 to A.J.P.B.), the ANR (grant CANDIHUB, ANR-14-CE14-0018-01, to C.D.), and the French Government's Investissement d'Avenir program (grant IBEID, ANR-10-LABX-62-IBEID, to C.D.). FUNDING INFORMATION This work, including the efforts of Alistair J.P. Brown, was funded by Wellcome Trust (097377 and 080088). This work, including the efforts of Janet Quinn, was funded by Wellcome Trust (097377 and 089930). This work, including the efforts of Alistair J.P. Brown, was funded by EC European Research Council (ERC) (ERC-2009-AdG-249793). This work, including the efforts of Alistair J.P. Brown, was funded by Biotechnology and Biological Sciences Research Council (BBSRC) (BB/F00513X/1 and BB/K017365/1). This work, including the efforts of Janet Quinn, was funded by Biotechnology and Biological Sciences Research Council (BBSRC) (BB/K016393/1). This work, including the efforts of Christophe d'Enfert, was funded by Agence Nationale de la Recherche (ANR) (ANR-14-CE14-0018-01 and ANR-10-LABX-62-IBEID). ; Peer reviewed ; Publisher PDF

Funding This research was supported by the Biotechnology and Biological Sciences Research Council (BBSRC) under the East of Scotland Bioscience Doctoral Training Partnership (EastBio DTP) [grant number BB/M010996/1]. The research of BdR is supported by the Scottish Government's Rural and Environment Science and Analytical Services Division (RESAS). Acknowledgements We thank Dr Niall. G Fallon (University of Aberdeen) for his analytical assistance. ; Peer reviewed ; Publisher PDF

Acknowledgements This work was funded by a Biotechnology and Biological Sciences Research Council (BBSRC) Collaborative Awards in Science and Engineering (CASE) award (to Huan Cao) as well as Wellcome Trust (089821/Z/09/Z) and UK Medical Research Council (MRC) (G0901682) grants. Alexander D. Barrow was funded by a Marie Curie International Outgoing Fellowship (EC 236932). John Trowsdale received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 695551). ; Peer reviewed ; Publisher PDF

We thank George Themistocleus, who conducted preliminary research on the indentation technique as part of his M.S. project. This work was funded by the Biotechnology and Biological Sciences Research Council (BBSRC) project "Rhizosphere by Design" (BB/L026058/1, BB/J000868/1, and BB/J011460/1) with support from a Royal Society University Research Fellowship, EPSRC EP/M020355/1 and ERC Consolidator Grant DIMR 646809. The James Hutton Institute receives funding from the Scottish Government. ; Peer reviewed ; Publisher PDF

A.C. and M.S. were funded by grants BB/P005578/1 and BB/M006832/1 respectively, from the UK Biotechnology and Biological Sciences Research Council (BBSRC). Financial support from the Spanish Ministry of Economy and Competitiveness (MEC, Project CTQ2016-75752-R) is gratefully acknowledged. D.G.-M. thanks the Asturian regional government for a predoctoral fellowship inside the Severo Ochoa program

The project was supported by grants from the Biotechnology and Biological Sciences Research Council (BBSRC BB/N01720X/1 and BB/N016742/1) and by the Scottish Government (RESAS Division) as part of the 2016–2021 commission. The research is based on data from experiments funded by the Scottish Government as part of the 2011–2016 commission, Agriculture and Horticulture Development Board (AHDB) Beef & Lamb, Quality Meat Scotland (QMS), and Department for Environment Food & Rural Affairs (Defra). ; Peer reviewed ; Publisher PDF