This is the author accepted manuscript. the final version is available from Elsevier via the DOI in this record ; Tropical biomes are the most diverse plant communities on Earth, and quantifying this diversity at large spatial scales is vital for many purposes. As macroecological approaches proliferate, the taxonomic uncertainties in species occurrence data are easily neglected and can lead to spurious findings in downstream analyses. Here, we argue that technological approaches offer potential solutions, but there is no single silver bullet to resolve uncertainty in plant biodiversity quantification. Instead, we propose the use of artificial intelligence (AI) approaches to build a data-driven framework that integrates several data sources – including spectroscopy, DNA sequences, image recognition, and morphological data. Such a framework would provide a foundation for improving species identification in macroecological analyses while simultaneously improving the taxonomic process of species delimitation. ; European Union ; Agence Nationale de la Recherche (CEBA)
This is the final version. Available on open access from Wiley via the DOI in this record ; Competition among trees is an important driver of community structure and dynamics in tropical forests. Neighboring trees may impact an individual tree's growth rate and probability of mortality, but large-scale geographic and environmental variation in these competitive effects has yet to be evaluated across the tropical forest biome. We quantified effects of competition on tree-level basal area growth and mortality for trees ≥ 10 cm diameter across 151 ~1-ha plots in mature tropical forests in Amazonia and tropical Africa by developing non-linear models that accounted for wood density, tree size and neighborhood crowding. Using these models, we assessed how water availability (i.e., climatic water deficit) and soil fertility influenced the predicted plot-level strength of competition (i.e., the extent to which growth is reduced, or mortality is increased, by competition across all individual trees). On both continents, tree basal area growth decreased with wood density, and increased with tree size. Growth decreased with neighborhood crowding, which suggests that competition is important. Tree mortality decreased with wood density and generally increased with tree size, but was apparently unaffected by neighborhood crowding. Across plots, variation in the plot-level strength of competition was most strongly related to plot basal area (i.e., the sum of the basal area of all trees in a plot), with greater reductions in growth occurring in forests with high basal area, but in Amazonia the strength of competition also varied with plot-level wood density. In Amazonia, the strength of competition increased with water availability because of the greater basal area of wetter forests, but was only weakly related to soil fertility. In Africa, competition was weakly related to soil fertility, and invariant across the shorter water availability gradient. Overall, our results suggest that competition influences the structure and dynamics of tropical forests primarily through effects on individual tree growth rather than mortality, and that the strength of competition largely depends on environment-mediated variation in basal area. ; Gordon and Betty Moore Foundation ; European Union FP7 ; European Research Council (ERC) ; Natural Environment Research Council (NERC) ; Conselho Nacional de Desenvolvimento Científico e Tecnológico of Brazil (CNPq) ; Microsoft Research ; University of Regina ; Royal Society
This is the final version of the article. Available from Wiley via the DOI in this record. ; Quantifying the relationship between tree diameter and height is a key component of efforts to estimate biomass and carbon stocks in tropical forests. Although substantial site-to-site variation in height-diameter allometries has been documented, the time consuming nature of measuring all tree heights in an inventory plot means that most studies do not include height, or else use generic pan-tropical or regional allometric equations to estimate height. Using a pan-tropical dataset of 73 plots where at least 150 trees had in-field ground-based height measurements, we examined how the number of trees sampled affects the performance of locally derived height-diameter allometries, and evaluated the performance of different methods for sampling trees for height measurement. Using cross-validation, we found that allometries constructed with just 20 locally measured values could often predict tree height with lower error than regional or climate-based allometries (mean reduction in prediction error = 0.46 m). The predictive performance of locally derived allometries improved with sample size, but with diminishing returns in performance gains when more than 40 trees were sampled. Estimates of stand-level biomass produced using local allometries to estimate tree height show no over- or under-estimation bias when compared with biomass estimates using field measured heights. We evaluated five strategies to sample trees for height measurement, and found that sampling strategies that included measuring the heights of the ten largest diameter trees in a plot outperformed (in terms of resulting in local height-diameter models with low height prediction error) entirely random or diameter size-class stratified approaches. Our results indicate that even limited sampling of heights can be used to refine height-diameter allometries. We recommend aiming for a conservative threshold of sampling 50 trees per location for height measurement, and including the ten trees with the largest diameter in this sample. ; This paper is a product of the RAINFOR, AfriTRON and T-FORCES networks, for which we are indebted to the hundreds of institutions, field assistants and local communities across many countries that have supported and hosted fieldwork. The three networks have been supported by the Natural Environment Research Council (NERC) Urgency Grants and NERC Consortium Grants "AMAZONICA" (NE/F005806/1), "TROBIT" (NE/D005590/1) and "BIO-RED" (NE/N012542/1), a NERC New Investigators Grant, a European Research Council grant ("Tropical Forests in the Changing Earth System"), the Gordon and Betty Moore Foundation, the David and Lucile Packard Foundation, the European Union's Seventh Framework Programme (283080, "GEOCARBON"; 282664, "AMAZALERT"), the Royal Society and Gabon's National Parks Agency (ANPN). R.J.W.B. is funded by a NERC research fellowship (grant ref: NE/I021160/1). S.L.L. was supported by a Royal Society University Research Fellowship, ERC Advanced Grant and a Phillip Leverhulme Prize. O.L.P. is supported by an ERC Advanced Grant and a Royal Society Wolfson Research Merit Award. L.F.B. was supported by a NERC studentship, RGS-IBG Henrietta Hutton Grant and Royal Society Dudley Stamp Award. R.H. and M.C. were supported through the long-term research development project no. RVO 67985939 and a KBFSC research fellowship (2011, to R.H.). M. Svátek was funded by the Ministry of Education, Youth and Sports of the Czech Republic (grant number INGO II LG15051). We thank Georgia Pickavance for assistance with database curation, and Natacha Nssi Bengone, Sylvester Chenikan, Eric Chezeaux, Armandu Daniels, Jean-Louis Doucet, Kath Jeffery, Edi Mirmanto, Abel Monteagudo-Mendoza, Faustin Mpanya Lukasu, Reuben Nilus, Guido Pardo, Lourens Poorter, Sylvester Tan, Marisol Toledo, Armando Torres-Lezama, John Tshibamba Mukendi, Richard Tshombe, Geertje van der Heijden, Lee White, Hannsjoerg Woell and John Woods, Gabon's National Parks Agency (ANPN), the Forest Development Authority of Liberia and Wildlife Conservation Society-Democratic Republic of Congo for assistance with access to datasets. We thank an anonymous reviewer for constructive comments on this manuscript.
This is the final version of the article. Available from Wiley via the DOI in this record. ; Understanding the processes that determine above-ground biomass (AGB) in Amazonian forests is important for predicting the sensitivity of these ecosystems to environmental change and for designing and evaluating dynamic global vegetation models (DGVMs). AGB is determined by inputs from woody productivity [woody net primary productivity (NPP)] and the rate at which carbon is lost through tree mortality. Here, we test whether two direct metrics of tree mortality (the absolute rate of woody biomass loss and the rate of stem mortality) and/or woody NPP, control variation in AGB among 167 plots in intact forest across Amazonia. We then compare these relationships and the observed variation in AGB and woody NPP with the predictions of four DGVMs. The observations show that stem mortality rates, rather than absolute rates of woody biomass loss, are the most important predictor of AGB, which is consistent with the importance of stand size structure for determining spatial variation in AGB. The relationship between stem mortality rates and AGB varies among different regions of Amazonia, indicating that variation in wood density and height/diameter relationships also influences AGB. In contrast to previous findings, we find that woody NPP is not correlated with stem mortality rates and is weakly positively correlated with AGB. Across the four models, basin-wide average AGB is similar to the mean of the observations. However, the models consistently overestimate woody NPP and poorly represent the spatial patterns of both AGB and woody NPP estimated using plot data. In marked contrast to the observations, DGVMs typically show strong positive relationships between woody NPP and AGB. Resolving these differences will require incorporating forest size structure, mechanistic models of stem mortality and variation in functional composition in DGVMs. ; This paper is a product of the European Union's Seventh Framework Programme AMAZALERT project (282664). The field data used in this study have been generated by the RAINFOR network, which has been supported by a Gordon and Betty Moore Foundation grant, the European Union's Seventh Framework Programme projects 283080, 'GEOCARBON'; and 282664, 'AMAZALERT'; ERC grant 'Tropical Forests in the Changing Earth System'), and Natural Environment Research Council (NERC) Urgency, Consortium and Standard Grants 'AMAZONICA' (NE/F005806/1), 'TROBIT' (NE/D005590/1) and 'Niche Evolution of South American Trees' (NE/I028122/1). Additional data were included from the Tropical Ecology Assessment and Monitoring (TEAM) Network – a collaboration between Conservation International, the Missouri Botanical Garden, the Smithsonian Institution and the Wildlife Conservation Society, and partly funded by these institutions, the Gordon and Betty Moore Foundation, and other donors. Fieldwork was also partially supported by Conselho Nacional de Desenvolvimento Científico e Tecnológico of Brazil (CNPq), project Programa de Pesquisas Ecológicas de Longa Duração (PELD-403725/2012-7). A.R. acknowledges funding from the Helmholtz Alliance 'Remote Sensing and Earth System Dynamics'; L.P., M.P.C. E.A. and M.T. are partially funded by the EU FP7 project 'ROBIN' (283093), with co-funding for E.A. from the Dutch Ministry of Economic Affairs (KB-14-003-030); B.C. [was supported in part by the US DOE (BER) NGEE-Tropics project (subcontract to LANL). O.L.P. is supported by an ERC Advanced Grant and is a Royal Society-Wolfson Research Merit Award holder. P.M. acknowledges support from ARC grant FT110100457 and NERC grants NE/J011002/1, and T.R.B. acknowledges support from a Leverhulme Trust Research Fellowship.
Aim: The accurate mapping of forest carbon stocks is essential for understanding the global carbon cycle, for assessing emissions from deforestation, and for rational land-use planning. Remote sensing (RS) is currently the key tool for this purpose, but RS does not estimate vegetation biomass directly, and thus may miss significant spatial variations in forest structure. We test the stated accuracy of pantropical carbon maps using a large independent field dataset. Location: Tropical forests of the Amazon basin. The permanent archive of the field plot data can be accessed at: http://dx.doi.org/10.5521/FORESTPLOTS.NET/2014_1 Methods: Two recent pantropical RS maps of vegetation carbon are compared to a unique ground-plot dataset, involving tree measurements in 413 large inventory plots located in nine countries. The RS maps were compared directly to field plots, and kriging of the field data was used to allow area-based comparisons. Results: The two RS carbon maps fail to capture the main gradient in Amazon forest carbon detected using 413 ground plots, from the densely wooded tall forests of the north-east, to the light-wooded, shorter forests of the south-west. The differences between plots and RS maps far exceed the uncertainties given in these studies, with whole regions over- or under-estimated by >???25%, whereas regional uncertainties for the maps were reported to be ??5%. Main conclusions: Pantropical biomass maps are widely used by governments and by projects aiming to reduce deforestation using carbon offsets, but may have significant regional biases. Carbon-mapping techniques must be revised to account for the known ecological variation in tree wood density and allometry to create maps suitable for carbon accounting. The use of single relationships between tree canopy height and above-ground biomass inevitably yields large, spatially correlated errors. This presents a significant challenge to both the forest conservation and remote sensing communities, because neither wood density nor species assemblages can be reliably mapped from space.
This is the final version. Available on open access from Wiley via the DOI in this record ; The full author list is available in the online article at the DOI in this record ; Aim: Palms are an iconic, diverse and often abundant component of tropical ecosystems that provide many ecosystem services. Being monocots, tree palms are evolutionarily, morphologically and physiologically distinct from other trees, and these differences have important consequences for ecosystem services (e.g., carbon sequestration and storage) and in terms of responses to climate change. We quantified global patterns of tree palm relative abundance to help improve understanding of tropical forests and reduce uncertainty about these ecosystems under climate change. Location: Tropical and subtropical moist forests. Time period: Current. Major taxa studied: Palms (Arecaceae). Methods: We assembled a pantropical dataset of 2,548 forest plots (covering 1,191 ha) and quantified tree palm (i.e., ≥10 cm diameter at breast height) abundance relative to co-occurring non-palm trees. We compared the relative abundance of tree palms across biogeographical realms and tested for associations with palaeoclimate stability, current climate, edaphic conditions and metrics of forest structure. Results: On average, the relative abundance of tree palms was more than five times larger between Neotropical locations and other biogeographical realms. Tree palms were absent in most locations outside the Neotropics but present in >80% of Neotropical locations. The relative abundance of tree palms was more strongly associated with local conditions (e.g., higher mean annual precipitation, lower soil fertility, shallower water table and lower plot mean wood density) than metrics of long-term climate stability. Life-form diversity also influenced the patterns; palm assemblages outside the Neotropics comprise many non-tree (e.g., climbing) palms. Finally, we show that tree palms can influence estimates of above-ground biomass, but the magnitude and direction of the effect require additional work. Conclusions: Tree palms are not only quintessentially tropical, but they are also overwhelmingly Neotropical. Future work to understand the contributions of tree palms to biomass estimates and carbon cycling will be particularly crucial in Neotropical forests. ; Natur og Univers, Det Frie Forskningsråd ; European Union Horizon 2020 ; Brazilian National Research Council ; Natural Environment Research Council (NERC) ; Vetenskapsrådet ; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior ; Fundação de Amparo à Pesquisa do Estado de São Paulo ; Villum Fonden
This is the final version. Available on open access from Wiley via the DOI in this record ; Most of the planet's diversity is concentrated in the tropics, which includes many regions undergoing rapid climate change. Yet, while climate-induced biodiversity changes are widely documented elsewhere, few studies have addressed this issue for lowland tropical ecosystems. Here we investigate whether the floristic and functional composition of intact lowland Amazonian forests have been changing by evaluating records from 106 long-term inventory plots spanning 30 years. We analyse three traits that have been hypothesized to respond to different environmental drivers (increase in moisture stress and atmospheric CO2 concentrations): maximum tree size, biogeographic water-deficit affiliation and wood density. Tree communities have become increasingly dominated by large-statured taxa, but to date there has been no detectable change in mean wood density or water deficit affiliation at the community level, despite most forest plots having experienced an intensification of the dry season. However, among newly recruited trees, dry-affiliated genera have become more abundant, while the mortality of wet-affiliated genera has increased in those plots where the dry season has intensified most. Thus, a slow shift to a more dry-affiliated Amazonia is underway, with changes in compositional dynamics (recruits and mortality) consistent with climate-change drivers, but yet to significantly impact whole-community composition. The Amazon observational record suggests that the increase in atmospheric CO2 is driving a shift within tree communities to large-statured species and that climate changes to date will impact forest composition, but long generation times of tropical trees mean that biodiversity change is lagging behind climate change. ; Support for RAINFOR has come from the Natural Environment Research Council (NERC) Urgency Grants and NERC Consortium Grants "AMAZONICA" (NE/F005806/1), "TROBIT" (NE/D005590/1) and "BIO‐RED" (NE/N012542/1), a European Research Council (ERC) grant (T‐FORCES, "Tropical Forests in the Changing Earth System"), the Gordon and Betty Moore Foundation, the European Union's Seventh Framework Programme (282664, "AMAZALERT") and the Royal Society (CH160091). OLP was supported by an ERC Advanced Grant and a Royal Society Wolfson Research Merit Award. KGD was supported by a Leverhulme Trust International Academic Fellowship. This paper is part of the PhD of AE‐M, which was funded by the ERC T‐FORCES grant. AE‐M is currently supported by T‐FORCES and the NERC project "TREMOR" (NE/N004655/1).
Tropical forests are global centres of biodiversity and carbon storage. Many tropical countries aspire to protect forest to fulfil biodiversity and climate mitigation policy targets, but the conservation strategies needed to achieve these two functions depend critically on the tropical forest tree diversity-carbon storage relationship. Assessing this relationship is challenging due to the scarcity of inventories where carbon stocks in aboveground biomass and species identifications have been simultaneously and robustly quantified. Here, we compile a unique pan-tropical dataset of 360 plots located in structurally intact old-growth closed-canopy forest, surveyed using standardised methods, allowing a multi-scale evaluation of diversity-carbon relationships in tropical forests. Diversity-carbon relationships among all plots at 1 ha scale across the tropics are absent, and within continents are either weak (Asia) or absent (Amazonia, Africa). A weak positive relationship is detectable within 1 ha plots, indicating that diversity effects in tropical forests may be scale dependent. The absence of clear diversity-carbon relationships at scales relevant to conservation planning means that carbon-centred conservation strategies will inevitably miss many high diversity ecosystems. As tropical forests can have any combination of tree diversity and carbon stocks both require explicit consideration when optimising policies to manage tropical carbon and biodiversity. ; This paper is a product of the RAINFOR, AfriTRON and T-FORCES networks, for which we are hugely indebted to hundreds of institutions, field assistants and local communities across many countries that have hosted fieldwork. The three networks have been supported by a European Research Council (ERC) grant ("T-FORCES" - Tropical Forests in the Changing Earth System), the Gordon and Betty Moore Foundation, the David and Lucile Packard Foundation, the European Union's Seventh Framework Programme (283080, 'GEOCARBON'; 282664, 'AMAZALERT'), and Natural Environment Research Council (NERC) Urgency Grants and NERC Consortium Grants 'AMAZONICA' (NE/F005806/1) and 'TROBIT' (NE/D005590/1), 'BIO-RED' (NE/N012542/1) and a NERC New Investigators Grant, the Royal Society, the Centre for International Forestry (CIFOR) and Gabon's National Parks Agency (ANPN). Additional data were included from the Tropical Ecology Assessment and Monitoring (TEAM) Network, a collaboration between Conservation International, the Missouri Botanical Garden, the Smithsonian Institution and the Wildlife Conservation Society, and partly funded by these institutions, the Gordon and Betty Moore Foundation, and other donors. J.T. was supported by a NERC PhD Studentship with CASE sponsorship from UNEP-WCMC. R.J.W.B. is funded by a NERC research fellowship (grant ref: NE/I021160/1). S.L.L. was supported by a Royal Society University Research Fellowship, ERC Advanced Grant (T-FORCES) and a Phillip Leverhulme Prize. O.L.P. is supported by an ERC Advanced Grant (T-FORCES) and a Royal Society Wolfson Research Merit Award. L.F.B. was supported by a NERC studentship and RGS-IBG Henrietta Hutton Grant. We thank the National Council for Science and Technology Development of Brazil (CNPq) for support to Project Cerrado/Amazonia Transition (PELD/403725/2012-7), Project Phytogeography of Amazonia/Cerrado Transition (CNPq/PPBio/457602/2012-0) and Productivity Grant to B.S.M and B.H.M-J. Funding for plots in the Udzungwa Mountains (Tanzania) was obtained from the Leverhulme Trust under the Valuing the Arc project. We thank the ANPN (Gabon), WCS-Congo and WCS-DR Congo, Marien Ngouabi University and the University of Kisangani for logistical support in Africa, and the Tropenbos Kalimantan project (ITCI plots) and WWF (KUB plots) for providing data from Asia. This study is contribution number 706 to the Technical Series (TS) of the BDFFP – (INPA-STRI). For assistance with access to datasets we thank Adriana Prieto, Agustín Rudas, Alejandro Araujo-Murakami, Alexander G. Parada Gutierrez, Anand Roopsind, Atila Alves de Oliveira, Claudinei Oliveira dos Santos, C. E. Timothy Paine, David Neill, Eliana Jimenez-Rojas, Freddy Ramirez Arevalo, Hannsjoerg Woell, Iêda Leão do Amaral, Irina Mendoza Polo, Isau Huamantupa-Chuquimaco, Julien Engel, Kathryn Jeffery, Luzmila Arroyo, Michael D. Swaine, Nallaret Davila Cardozo, Natalino Silva, Nigel C. A. Pitman, Niro Higuchi, Raquel Thomas, Renske van Ek, Richard Condit, Rodolfo Vasquez Martinez, Timothy J. Killeen, Walter A. Palacios, Wendeson Castro. We thank Georgina Mace and Jon Lloyd for comments on the manuscript. We thank our deceased colleagues, Samuel Almeida, Kwaku Duah, Alwyn Gentry, and Sandra Patiño, for their invaluable contributions to this work and our wider understanding of tropical forest ecology.