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AbstractAgricultural abandonment is a major driver of change in rural landscapes. Assumed to provide beneficial results to the environment and the conservation of biota, rural abandonment triggers landscape and biotic homogenization and loss of valuable species and habitats. This article focuses on the ecological effects and conservation challenges of shifts in extensive grazing regimes on marginal pastureland of Mediterranean mountains. We conceptualize a navigated socioecological transition toward conservation‐oriented management after the collapse of historical land systems. The article provides examples from the LIFE+ project "Higro," developed in mountainous protected areas in Portugal, of how management for conservation could sustain disturbance‐dependent habitats. We argue that actively and regularly managing large habitat areas should be envisaged as a short‐term approach to limit the immediate effects of rural abandonment. A gradual integration of conservation targets with other activities in changing rural economies is necessary to foster long‐term conservation of species and habitats, building on the link between conservation‐oriented habitat management and ecosystem services in rural landscapes. Conservation goals should run alongside recovery of social systems and innovation applied to traditional sources of income. This parallel development would contribute to building up social‐ecological resilience by maintaining a diversity of social and ecological capital in rural areas.