Underwater sound in the oceans has been significantly rising in the past decades due to an increase in human activities, adversely affecting the marine environment. In order to assess and limit the impact of underwater noise, the European Commission's Marine Strategy Framework Directive (MSFD) included the long-term monitoring of low-frequency underwater sound as a relevant indicator to achieve a good environmental status. There is a wide range of commercial hydrophones and observing platforms able to perform such measurements. However, heterogeneity and lack of standardization in both hydrophones and observing platforms makes the integration and data management tasks time-consuming and error-prone. Moreover, their power and communications constraints need to be addressed to make them suitable for long-term ocean sound monitoring. Measured underwater sound levels are challenging to compare because different measurement methodologies are used, leading to a risk of misunderstandings and data misinterpretation. Furthermore, the exact methodology applied is not always public or accessible, significantly reducing ocean sound data re-usability. Within this work, a universal architecture for ocean sound measurement is presented, addressing hydrophone integration, real-time in situ processing and data management challenges. Emphasis is placed on generic and re-usable components, so it can be seamlessly replicated and deployed in new scenarios regardless of the underlying hardware and software constraints (hydrophone model, observing platform, operating system, etc.). Within the proposed architecture, a generic implementation of an underwater sound algorithm based on underwater noise measurement best practices is provided. Standardized and coherent metadata with emphasis on strong semantics is discussed, providing the building blocks for FAIR (Findable, Accessible, Interoperable, Reusable) ocean sound data management. ; This work has been funded by the Spanish government project RESBIO (grant agreement TEC2017-87861-R), the EU projects ENVRI-FAIR (grant agreement 824068), the JONAS INTERREG Atlantic Area-funded project (EAPA_52/2018), partly by the Generalitat de Catalunya SARTI-MAR project (grant agreement 2017 SGR 371) and partly by the FPI-UPC_2015 scholarship program. ; Peer Reviewed ; Postprint (author's final draft)
OBSEA is an underwater cabled observatory located 4 km off the coast of Vilanova i la Geltru, Barcelona, Spain at 20m depth. It has been continuously operating since 2009 providing multi-parametric data from a wide range of sensors. Its location close to the coast, easily accessible with boats an operated by scuba divers make it valuable not only as a coastal observatory, but also as a test site. It is equipped with a variety of acoustic systems, allowing activities such as long-term passive acoustic monitoring, sound source localization and target tracking. The observatory is equipped with a Naxys-Bjørge Ethernet Hydrophone, proving real-time acoustic data. Since 2017 the observatory is providing real-time Sound Pressure Level (SPL) measurements, computed in 1/3 octave bands to comply with the Marine Strategy Framework Directive, specifically the long-term underwater noise measurements indicators. Real-time SPLs values are propagated to EMODnet physics data portal, where they are available to the community. Additionally, the OBSEA also has a Sensor Observation Service (SOS) entry point, fully compatible with the Sensor Web Enablement standards. A NeXOS A2 hydrophone array is also available at OBSEA. This sensor system is composed of four hydrophones synchronized with a master unit which processes the Time Difference Of Arrival (TDOA), estimating the localization of the sound source. It can be used to track a specific device (i.e. an acoustic tag) or to estimate the location of an anthropogenic sound source (e.g. ship, pile-driving, etc.). Complementing the passive acoustic monitoring features, the observatory also has the capability to use active tracking techniques based on a set of Vemco tags and receivers (e.g. behavioural study of shrimps using tags). Although the default Vemco receivers only detect the presence of a tag within its range, it is possible to enhance the results with an USBL from EvoLogics to precisely trace the trajectory over time, significantly improving the behavioural data obtained. To enhance the tracking capabilities beyond the site itself, the Guanay II AUV can be used. This vehicle uses an EvoLogics S2C-18/34 modem to track moving objects using single-beacon range-only techniques. All these capabilities make the OBSEA observatory a valuable asset to the ocean observing community providing long-term underwater noise data and the ideal framework for behavioural studies based on acoustic tracking. Moreover, thanks to its role as test site, it is possible to validate and refine existing sensor systems, algorithms and monitoring techniques. ; This work is partially funded by the EMSO-Link Project under the European Union's Horizon 2020 programme (agreement nº 731036) and by Generalitat de Catalunya "Sistemas de Adquisición Remota de datos y Tratamiento de la Información en el Medio Marino" (SARTI-MAR)" 2017 SGR 371. Researchers want to acknowledge the support of the Associated Unit Tecnoterra composed by members of Universitat Politècnica de Catalunya (UPC) and the Consejo Superior de Investigaciones Científicas (CSIC). ; Peer Reviewed ; Postprint (published version)
Deep-sea ecological monitoring is increasingly recognized as indispensable for the comprehension of the largest biome on Earth, but at the same time it is subjected to growing human impacts for the exploitation of biotic and abiotic resources. Here, we present the Naples Ecological REsearch (NEREA) stand-alone observatory concept (NEREA-fix), an integrated observatory with a modular, adaptive structure, characterized by a multiparametric video-platform to be deployed in the Dohrn canyon (Gulf of Naples, Tyrrhenian Sea) at ca. 650 m depth. The observatory integrates a seabed platform with optoacoustic and oceanographic/geochemical sensors connected to a surface transmission buoy, plus a mooring line (also equipped with depth-staged environmental sensors). This reinforced high-frequency and long-lasting ecological monitoring will integrate the historical data conducted over 40 years for the Long-Term Ecological Research (LTER) at the station "Mare Chiara", and ongoing vessel-assisted plankton (and future environmental DNA-eDNA) sampling. NEREA aims at expanding the observational capacity in a key area of the Mediterranean Sea, representing a first step towards the establishment of a bentho-pelagic network to enforce an end-to-end transdisciplinary approach for the monitoring of marine ecosystems across a wide range of animal sizes (from bacteria to megafauna). ; This research was funded by PON "Iniziative in supporto al consolidamento e potenziamento dell'infrastruttura EMSO e delle sue attività (InSEA)" - European Union - Italian Ministry of University and Research, grant number PIR01_00030. ; Peer Reviewed ; Postprint (published version)
In the next decade the pressures on ocean systems and the communities that rely on them will increase along with impacts from the multiple stressors of climate change and human activities. Our ability to manage and sustain our oceans will depend on the data we collect and the information and knowledge derived from it. Much of the uptake of this knowledge will be outside the ocean domain, for example by policy makers, local Governments, custodians, and other organizations, so it is imperative that we democratize or open the access and use of ocean data. This paper looks at how technologies, scoped by standards, best practice and communities of practice, can be deployed to change the way that ocean data is accessed, utilized, augmented and transformed into information and knowledge. The current portal-download model which requires the user to know what data exists, where it is stored, in what format and with what processing, limits the uptake and use of ocean data. Using examples from a range of disciplines, a web services model of data and information flows is presented. A framework is described, including the systems, processes and human components, which delivers a radical rethink about the delivery of knowledge from ocean data. A series of statements describe parts of the future vision along with recommendations about how this may be achieved. The paper recommends the development of virtual test-beds for end-to-end development of new data workflows and knowledge pathways. This supports the continued development, rationalization and uptake of standards, creates a platform around which a community of practice can be developed, promotes cross discipline engagement from ocean science through to ocean policy, allows for the commercial sector, including the informatics sector, to partner in delivering outcomes and provides a focus to leverage long term sustained funding. The next 10 years will be "make or break" for many ocean systems. The decadal challenge is to develop the governance and cooperative mechanisms to harness emerging information technology to deliver on the goal of generating the information and knowledge required to sustain oceans into the future. ; Peer Reviewed ; Postprint (published version)
In the next decade the pressures on ocean systems and the communities that rely on them will increase along with impacts from the multiple stressors of climate change and human activities. Our ability to manage and sustain our oceans will depend on the data we collect and the information and knowledge derived from it. Much of the uptake of this knowledge will be outside the ocean domain, for example by policy makers, local Governments, custodians, and other organizations, so it is imperative that we democratize or open the access and use of ocean data. This paper looks at how technologies, scoped by standards, best practice and communities of practice, can be deployed to change the way that ocean data is accessed, utilized, augmented and transformed into information and knowledge. The current portal-download model which requires the user to know what data exists, where it is stored, in what format and with what processing, limits the uptake and use of ocean data. Using examples from a range of disciplines, a web services model of data and information flows is presented. A framework is described, including the systems, processes and human components, which delivers a radical rethink about the delivery of knowledge from ocean data. A series of statements describe parts of the future vision along with recommendations about how this may be achieved. The paper recommends the development of virtual test-beds for end-to-end development of new data workflows and knowledge pathways. This supports the continued development, rationalization and uptake of standards, creates a platform around which a community of practice can be developed, promotes cross discipline engagement from ocean science through to ocean policy, allows for the commercial sector, including the informatics sector, to partner in delivering outcomes and provides a focus to leverage long term sustained funding. The next 10 years will be "make or break" for many ocean systems. The decadal challenge is to develop the governance and cooperative mechanisms to harness emerging information technology to deliver on the goal of generating the information and knowledge required to sustain oceans into the future. ; Peer Reviewed ; Postprint (published version)
The deep sea (i.e., 200 m depth) is a highly dynamic environment where benthic ecosystems are functionally and ecologically connected with the overlying water column and the surface. In the aphotic deep sea, organisms rely on external signals to synchronize their biological clocks. Apart from responding to cyclic hydrodynamic patterns and periodic fluctuations of variables such as temperature, salinity, phytopigments, and oxygen concentration, the arrival of migrators at depth on a 24-h basis (described as Diel Vertical Migrations; DVMs), and from well-lit surface and shallower waters, could represent a major response to a solar-based synchronization between the photic and aphotic realms. In addition to triggering the rhythmic behavioral responses of benthic species, DVMs supply food to deep seafloor communities through the active downward transport of carbon and nutrients. Bioluminescent species of the migrating deep scattering layers play a not yet quantified (but likely important) role in the benthopelagic coupling, raising the need to integrate the efficient detection and quantification of bioluminescence into large-scale monitoring programs. Here, we provide evidence in support of the benefits for quantifying and continuously monitoring bioluminescence in the deep sea. In particular, we recommend the integration of bioluminescence studies into long-term monitoring programs facilitated by deep-sea neutrino telescopes, which offer photon counting capability. Their Photo-Multiplier Tubes and other advanced optical sensors installed in neutrino telescope infrastructures can boost the study of bioluminescent DVMs in concert with acoustic backscatter and video imagery from ultra-low-light cameras. Such integration will enhance our ability to monitor proxies for the mass and energy transfer from the upper ocean into the deep-sea Benthic Boundary Layer (BBL), a key feature of the ocean biological pump and crucial for monitoring the effects of climate-change. In addition, it will allow for investigating the role of deep scattering DVMs in the behavioral responses, abundance and structure of deep-sea benthic communities. The proposed approach may represent a new frontier for the study and discovery of new, taxon-specific bioluminescence capabilities. It will thus help to expand our knowledge of poorly described deep-sea biodiversity inventories and further elucidate the connectivity between pelagic and benthic compartments in the deep-sea. ; This work was developed within the framework of the Tecnoterra (ICM-CSIC/UPC) and the following project activities: ARIM (Autonomous Robotic sea-floor Infrastructure for benthopelagic Monitoring; MartTERA ERA-Net Cofound) and RESBIO (TEC2017-87861-R; Ministerio de Ciencia, Innovación y Universidades; PIs: JR and JA) and with funding from the Spanish government through the 'Severo Ochoa Centre of Excellence' accreditation (CEX2019-000928-S). Ocean Networks Canada was funded through Canada Foundation for Innovation-Major Science Initiative Fund 30199 to FD and BP. The STRAW and STRAW-b experiments deployed and connected through the NEPTUNE cabled observatory are supported by the German Research Foundation through grant SFB 1258 "Neutrinos and Dark Matter in Astro- and Particle Physics," the cluster of excellence "Origin and Structure of the Universe," and the University of Alberta. ; Peer Reviewed ; Postprint (published version)
The implementation of submarine sensors at regional scale has been considered within the ESFRI Roadmap as a European strategic infrastructure. In this sense European Union has funded projects as ESONET and EMSO that are initiatives to establish a network of long-term deep sea observatories. Within this framework, Spanish Ministry of Science and Innovation has made an effort, supporting and funding several projects concerning marine platforms at submarine and coastal areas to accomplish these technological challenges. The OBSEA submarine platform was deployed by the BO Sarmiento de Gamboa last 19th May, since then is working properly and only some adjustments have been needed. In this initial period the submarine laboratory OBSEA will be available for ESONET and EMSO communities for testing and developing new sensors, with the advantage of an easily reachable location and online checking through web page. ; Postprint (published version)
The implementation of submarine sensors at regional scale has been considered within the ESFRI Roadmap as a European strategic infrastructure. In this sense European Union has funded projects as ESONET and EMSO that are initiatives to establish a network of long-term deep sea observatories. Within this framework, Spanish Ministry of Science and Innovation has made an effort, supporting and funding several projects concerning marine platforms at submarine and coastal areas to accomplish these technological challenges. The OBSEA submarine platform was deployed by the BO Sarmiento de Gamboa last 19th May, since then is working properly and only some adjustments have been needed. In this initial period the submarine laboratory OBSEA will be available for ESONET and EMSO communities for testing and developing new sensors, with the advantage of an easily reachable location and online checking through web page. ; Postprint (published version)
Deep-sea ecosystems are reservoirs of biodiversity that are largely unexplored, but their exploration and biodiscovery are becoming a reality thanks to biotechnological advances (e.g., omics technologies) and their integration in an expanding network of marine infrastructures for the exploration of the seas, such as cabled observatories. While still in its infancy, the application of environmental DNA (eDNA) metabarcoding approaches is revolutionizing marine biodiversity monitoring capability. Indeed, the analysis of eDNA in conjunction with the collection of multidisciplinary optoacoustic and environmental data, can provide a more comprehensive monitoring of deep-sea biodiversity. Here, we describe the potential for acquiring eDNA as a core component for the expanding ecological monitoring capabilities through cabled observatories and their docked Internet Operated Vehicles (IOVs), such as crawlers. Furthermore, we provide a critical overview of four areas of development: (i) Integrating eDNA with optoacoustic imaging; (ii) Development of eDNA repositories and cross-linking with other biodiversity databases; (iii) Artificial Intelligence for eDNA analyses and integration with imaging data; and (iv) Benefits of eDNA augmented observatories for the conservation and sustainable management of deep-sea biodiversity. Finally, we discuss the technical limitations and recommendations for future eDNA monitoring of the deep-sea. It is hoped that this review will frame the future direction of an exciting journey of biodiscovery in remote and yet vulnerable areas of our planet, with the overall aim to understand deep-sea biodiversity and hence manage and protect vital marine resources. ; This research has been funded within the framework of the following project activities: ARIM (Autonomous Robotic Sea-Floor Infrastructure for Benthopelagic Monitoring; MarTERA ERA-Net Cofound); RESBIO (TEC2017-87861-R; Ministerio de Ciencia, Innovación y Universidades); JERICO-S3: (Horizon 2020; Grant Agreement no. 871153); ENDURUNS (Research Grant Agreement H2020-MG-2018-2019-2020 n.824348); Slovenian Research Agency (Research Core Funding Nos. P1-0237 and P1-0255 and project ARRS-RPROJ-JR-J1-3015). We also profited of the funding from the Spanish Government through the "Severo Ochoa Centre of Excellence" accreditation (CEX2019-000928-S) and Italian Ministry of Education (MIUR) under the "Bando premiale FOE 2015" (nota prot. N. 850, dd. 27 ottobre 2017) with the project EarthCruisers "EARTH's CRUst Imagery for Investigating Seismicity, Volcanism, and Marine Natural Resources in the Sicilian Offshore". Ocean Networks Canada was funded through Canada Foundation for Innovation-Major Science Initiative (CFI-MSI) fund 30199. ; Peer Reviewed ; Postprint (published version)
Seafloor multiparametric fibre-optic-cabled video observatories are emerging tools for standardized monitoring programmes, dedicated to the production of real-time fishery-independent stock assessment data. Here, we propose that a network of cabled cameras can be set up and optimized to ensure representative long-term monitoring of target commercial species and their surrounding habitats. We highlight the importance of adding the spatial dimension to fixed-point-cabled monitoring networks, and the need for close integration with Artificial Intelligence pipelines, that are necessary for fast and reliable biological data processing. We then describe two pilot studies, exemplary of using video imagery and environmental monitoring to derive robust data as a foundation for future ecosystem-based fish-stock and biodiversity management. The first example is from the NE Pacific Ocean where the deep-water sablefish (Anoplopoma fimbria) has been monitored since 2010 by the NEPTUNE cabled observatory operated by Ocean Networks Canada. The second example is from the NE Atlantic Ocean where the Norway lobster (Nephrops norvegicus) is being monitored using the SmartBay observatory developed for the European Multidisciplinary Seafloor and water column Observatories. Drawing from these two examples, we provide insights into the technological challenges and future steps required to develop full-scale fishery-independent stock assessments. ; This work was funded by the following project activities: ARIM (Autonomous Robotic sea-floor Infrastructure for benthopelagic Monitoring; MartTERA ERA-Net Cofound), ARCHES (Autonomous Robotic Networks to Help Modern Societies; German Helmholtz Association), RESBIO (TEC2017-87861-R; Ministerio de Ciencia, Innovación y Universidades, Spanish Government), RESNEP (CTM2017-82991-C2-1-R; Ministerio de Ciencia, Innovación y Universidades, Spanish Government), and SmartLobster (EMSO-LINK Trans National Access-TNA). The EMSO_SmartBay cabled observatory was funded by Science Foundation Ireland (SFI) as part of a SFI Research Infrastructure Award Grant No. 12/RI/2331. ; Peer Reviewed ; Postprint (author's final draft)
The oceans are a fundamental source for climate balance, sustainability of resources and life on Earth, therefore society has a strong and pressing interest in maintaining and, where possible, restoring the health of the marine ecosystems. Effective, integrated ocean observation is key to suggesting actions to reduce anthropogenic impact from coastal to deep-sea environments and address the main challenges of the 21st century, which are summarized in the UN Sustainable Development Goals and Blue Growth strategies. The European Multidisciplinary Seafloor and water column Observatory (EMSO), is a European Research Infrastructure Consortium (ERIC), with the aim of providing long-term observations via fixed-point ocean observatories in key environmental locations across European seas from the Arctic to the Black Sea. These may be supported by ship-based observations and autonomous systems such as gliders. In this paper, we present the EMSO Generic Instrument Module (EGIM), a deployment ready multi-sensor instrumentation module, designed to measure physical, biogeochemical, biological and ecosystem variables consistently, in a range of marine environments, over long periods of time. Here, we describe the system, features, configuration, operation and data management. We demonstrate, through a series of coastal and oceanic pilot experiments that the EGIM is a valuable standard ocean observation module, which can significantly improve the capacity of existing ocean observatories and provides the basis for new observatories. The diverse examples of use included the monitoring of fish activity response upon oceanographic variability, hydrothermal vent fluids and particle dispersion, passive acoustic monitoring of marine mammals and time series of environmental variation in the water column. With the EGIM available to all the EMSO Regional Facilities, EMSO will be reaching a milestone in standardization and interoperability, marking a key capability advancement in addressing issues of sustainability in resource and habitat management of the oceans. ; This work was funded by the project EMSODEV (Grant agreement No 676555) supported by DG Research and Innovation of the European Commission under the Research Infrastructures Programme of the H2020. EMSO-link EC project (Grant agreement No 731036) provided additional funding. Other projects which supported the work include Plan Estatal de Investigación Científica y Técnica y de Innovación 2017–2020, project BITER-LANDER PID2020- 114732RB-C32, iFADO (Innovation in the Framework of the Atlantic Deep Ocean, 2017–2021) EAPA_165/2016. The Spanish Government contributed through the "Severo Ochoa Centre Excellence" accreditation to ICM-CSIC (CEX2019-000928-S) and the Research Unit Tecnoterra (ICM-CSIC/UPC). UK colleagues were supported by Climate Linked Atlantic Sector Science (CLASS) project supported by NERC National Capability funding (NE/R015953/1). ; Peer Reviewed ; Article signat per 33 autors/es: Nadine Lantéri; Henry A. Ruh; Andrew Gates; Enoc Martínez; Joaquin del Rio Fernandez; Jacopo Aguzzi; Mathilde Cannat; Eric Delory; Davide Embriaco; Robert Huber; Marjolaine Matabos;George Petihakis; Kieran Reilly; Jean-François Rolin; Mike van der Schaar; Michel André; Jérôme Blandin; Andrés Cianca; Marco Francescangeli; Oscar Garcia; Susan Hartman; Jean-Romain Lagadec; Julien Legrand; Paris Pagonis; Jaume Piera; Xabier Remirez; Daniel M. Toma; Giuditta Marinaro; Bertrand Moreau; Raul Santana; Hannah Wright; Juan José Dañobeitia; Paolo Favali ; Postprint (published version)
