Integration of gene expression and DNA methylation identifies epigenetically controlled modules related to PM2.5 exposure
Air pollution has been associated with adverse health effects across the life-course. Although underlying mechanisms are unclear, several studies suggested pollutant-induced changes in transcriptomic profiles. In this meta-analysis of transcriptome-wide association studies of 656 children and adolescents from three European cohorts participating in the MeDALL Consortium, we found two differentially expressed transcript clusters (FDR p < 0.05) associated with exposure to particulate matter < 2.5 µm in diameter (PM2.5) at birth, one of them mapping to the MIR1296 gene. Further, by integrating gene expression with DNA methylation using Functional Epigenetic Modules algorithms, we identified 9 and 6 modules in relation to PM2.5 exposure at birth and at current address, respectively (including NR1I2, MAPK6, TAF8 and SCARA3). In conclusion, PM2.5 exposure at birth was linked to differential gene expression in children and adolescents. Importantly, we identified several significant interactome hotspots of gene modules of relevance for complex diseases in relation to PM2.5 exposure. ; European Community's 75 Seventh Framework Program under grant agreement numbers: 211250 (ESCAPE), and 76 261357 (MeDALL) ; European Research Council (grant agreement number 757919, TRIBAL) ; Swedish Research Council ; The Swedish Heart-Lung Foundation, Region Stockholm ; Strategic Research Programme (SFO) in Epidemiology, Karolinska Institutet ; Formas ; Swedish Environment Protection Agency ; Swedish Asthma and Allergy Research Foundation ; Cancer and Allergy Foundation ; Swedish Research Council for Health, Working life and Welfare (FORTE 2017-01146) ; Federal Ministry for Education, Science, Research and Technology ; Helmholtz Zentrum Munich ; Research Institute at Marien-Hospital Wesel, LMU Munich, TU Munich ; Leibniz Research-Institute for Environmental Medicine at the University of Düsseldorf ; Federal Ministry for Environment (IUF Düsseldorf, FKZ 20462296) ; Mead Johnson ; Nestlé ; Instituto de Salud Carlos III (Red INMA G03/176; CB06/02/0041; PI04/1436; PI06/0867; PI08/1151; and PI18/01142 ; Generalitat de Catalunya-CIRIT 1999SGR 00241 ; Department of Health of the Basque Government (2005111093) ; Provincial Government of Gipuzkoa (DFG06/002) ; Municipalities of the study area (Zumarraga, Urretxu , Legazpi, 101 Azkoitia y Azpeitia y Beasain) ; Accepted