For societies with writing systems, hereditary leadership is documented as one of the hallmarks of early political complexity and governance. In contrast, it is unknown whether hereditary succession played a role in the early formation of prehistoric complex societies that lacked writing. Here we use an archaeogenomic approach to identify an elite matriline that persisted between 800 and 1130 CE in Chaco Canyon, the centre of an expansive prehistoric complex society in the Southwestern United States. We show that nine individuals buried in an elite crypt at Pueblo Bonito, the largest structure in the canyon, have identical mitochondrial genomes. Analyses of nuclear genome data from six samples with the highest DNA preservation demonstrate mother–daughter and grandmother–grandson relationships, evidence for a multigenerational matrilineal descent group. Together, these results demonstrate the persistence of an elite matriline in Chaco for ∼330 years.
The exact timing, route, and process of the initial peopling of the Americas remains uncertain despite much research. Archaeological evidence indicates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia began to retreat. Genetic estimates of the timing and route of entry have been constrained by the lack of suitable calibration points and low genetic diversity of Native Americans. We sequenced 92wholemitochondrial genomes from pre-Columbian South American skeletons dating from 8.6 to 0.5 ka, allowing a detailed, temporally calibrated reconstruction of the peopling of the Americas in a Bayesian coalescent analysis. The data suggest that a small population entered the Americas via a coastal route around 16.0 ka, following previous isolation in eastern Beringia for ∼2.4 to 9 thousand years after separation from eastern Siberian populations. Following a rapid movement throughout the Americas, limited gene flow in South America resulted in a marked phylogeographic structure of populations, which persisted through time. All of the ancient mitochondrial lineages detected in this study were absent from modern data sets, suggesting a high extinction rate. To investigate this further, we applied a novel principal components multiple logistic regression test to Bayesian serial coalescent simulations. The analysis supported a scenario in which European colonization caused a substantial loss of pre-Columbian lineages. ; Fil: Llamas, Bastien. University of Adelaide; Australia ; Fil: Fehren Schmitz, Lars. University of California; Estados Unidos ; Fil: Valverde, Guido. University of Adelaide; Australia ; Fil: Soubrier, Julien. University of Adelaide; Australia ; Fil: Mallick, Swapan. Harvard Medical School; Estados Unidos ; Fil: Rohland, Nadin. Harvard Medical School; Estados Unidos ; Fil: Nordenfelt, Susanne. Harvard Medical School; Estados Unidos ; Fil: Valdiosera, Cristina. La Trobe University; Australia ; Fil: Richards, Stephen M. University of Adelaide; Australia ; Fil: Rohrlach, Adam. University of Adelaide; Australia ; Fil: Barreto Romero, Maria Inés. Museo de Sitio Huaca Pucllana; Perú ; Fil: Flores Espinoza, Isabel. Museo de Sitio Huaca Pucllana; Perú ; Fil: Tomasto Cagigao, Elsa. Pontificia Universidad Católica de Perú; Perú ; Fil: Watson Jiménez, Lucía. Pontificia Universidad Católica de Perú; Perú. Centro de Investigaciones Arqueológicas del Museo de Sitio de Ancón; Perú ; Fil: Makowski, Krzysztof. Pontificia Universidad Católica de Perú; Perú ; Fil: Leboreiro Reyna, Ilán Santiago. Instituto Nacional de Antropologia E Historia, Mexico; México ; Fil: Mansilla Lory, Josefina. Instituto Nacional de Antropologia E Historia, Mexico; México ; Fil: Ballivián Torrez, Julio Alejandro. Unidad de Arqueología y Museos; Bolivia ; Fil: Rivera, Mario A. Universidad de Magallanes; Chile ; Fil: Burger, Richard L. Harvard University; Estados Unidos ; Fil: Ceruti, Maria Constanza. Universidad Católica de Salta; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina ; Fil: Reinhard, Johan. National Geographic Society; Fil: Wells, R. Spencer. University of Texas at Austin; Estados Unidos. National Geographic Society; Fil: Politis, Gustavo Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; Argentina ; Fil: Santoro Vargas, Calogero Mauricio. Universidad de Tarapacá de Arica; Chile ; Fil: Standen, Vivien G. Universidad de Tarapacá de Arica; Chile ; Fil: Smith, Colin. La Trobe University; Australia ; Fil: Reich, David. Harvard Medical School; Estados Unidos ; Fil: Ho, Simon Y. W. The University Of Sydney; Australia ; Fil: Cooper, Alan. University of Adelaide; Australia ; Fil: Haak, Wolfgang. University of Adelaide; Australia
Changes in potential regulatory elements are thought to be key drivers of phenotypic divergence. However, identifying changes to regulatory elements that underlie human-specific traits has proven very challenging. Here, we use 63 reconstructed and experimentally measured DNA methylation maps of ancient and present-day humans, as well as of six chimpanzees, to detect differentially methylated regions that likely emerged in modern humans after the split from Neanderthals and Denisovans. We show that genes associated with face and vocal tract anatomy went through particularly extensive methylation changes. Specifically, we identify widespread hypermethylation in a network of face- and voice-associated genes (SOX9, ACAN, COL2A1, NFIX and XYLT1). We propose that these repression patterns appeared after the split from Neanderthals and Denisovans, and that they might have played a key role in shaping the modern human face and vocal tract. ; D.G. is supported by the Clore Israel Foundation. TMB is supported by BFU2017-86471-P (MINECO/FEDER, UE), U01 MH106874 grant, Howard Hughes International Early Career, Obra Social "La Caixa" and Secretaria d'Universitats i Recerca and CERCA Program del Departament d'Economia i Coneixement de la Generalitat de Catalunya. D.R. is an Investigator of the Howard Hughes Medical Institute and is also supported by an Allen Discovery Center for the Study of Human Brain Evolution funded the Paul G. Allen Family Foundation. C.L.-F. is supported by FEDER and BFU2015-64699-P grant from the Spanish government. R.P. was supported by ERC starting grant ADNABIOARC (263441). R.M.G. and J.M.O. are supported by NYSTEM contract C030133. Funding for the collection and processing of the 850K chimpanzee data was provided by the Leakey Foundation Research Grant for Doctoral Students, Wenner-Gren Foundation Dissertation Fieldwork Grant (Gr. 9310), James F. Nacey Fellowship from the Nacey Maggioncalda Foundation, International Primatological Society Research Grant, Sigma Xi Grant-in-Aid of Research, Center for Evolution and Medicine Venture Fund (ASU), Graduate Research and Support Program Grant (GPSA, ASU), and Graduate Student Research Grant (SHESC, ASU) to G.H. Collection of the chimpanzee bone from Tanzania was funded by the Jane Goodall Institute, and grants from the US National Institutes of Health (AI 058715) and National Science Foundation (IOS-1052693), and facilitated by Elizabeth Lonsdorf and Beatrice Hahn. ; Peer reviewed
There are many unanswered questions about the population history of the Central and South Central Andes, particularly regarding the impact of large-scale societies, such as the Moche, Wari, Tiwanaku, and Inca. We assembled genome-wide data on 89 individuals dating from ~9000-500 years ago (BP), with a particular focus on the period of the rise and fall of state societies. Today's genetic structure began to develop by 5800 BP, followed by bi-directional gene flow between the North and South Highlands, and between the Highlands and Coast. We detect minimal admixture among neighboring groups between ~2000-500 BP, although we do detect cosmopolitanism (people of diverse ancestries living side-by-side) in the heartlands of the Tiwanaku and Inca polities. We also reveal cases of long-range mobility connecting the Andes to Argentina, and the Northwest Andes to the Amazon Basin.
There are many unanswered questions about the population history of the Central and South Central Andes, particularly regarding the impact of large-scale societies, such as the Moche, Wari, Tiwanaku, and Inca. We assembled genome-wide data on 89 individuals dating from ∼9,000-500 years ago (BP), with a particular focus on the period of the rise and fall of state societies. Today's genetic structure began to develop by 5,800 BP, followed by bi-directional gene flow between the North and South Highlands, and between the Highlands and Coast. We detect minimal admixture among neighboring groups between ∼2,000–500 BP, although we do detect cosmopolitanism (people of diverse ancestries living side-by-side) in the heartlands of the Tiwanaku and Inca polities. We also highlight cases of long-range mobility connecting the Andes to Argentina and the Northwest Andes to the Amazon Basin. Video Abstract: [Figure presented] Genome-wide data from 89 ancient humans illuminates the changes to the genetic landscape in the Central Andes over 9,000 years, revealing large-scale gene flow and cosmopolitan societies in the Tiwanaku and Inca polities. ; Fil: Nakatsuka, Nathan. Harvard Medical School; Estados Unidos ; Fil: Lazaridis, Iosif. Harvard Medical School; Estados Unidos ; Fil: Barbieri, Chiara. Max Planck Institute For The Science Of Human History; Alemania ; Fil: Skoglund, Pontus. University Of Zurich; Suiza ; Fil: Rohland, Nadin. Harvard Medical School; Estados Unidos ; Fil: Mallick, Swapan. Harvard Medical School; Estados Unidos ; Fil: Posth, Cosimo. Max Planck Institute For The Science Of Human History; Alemania ; Fil: Harkins Kinkaid, Kelly. University of California; Estados Unidos ; Fil: Ferry, Matthew. Harvard Medical School; Estados Unidos ; Fil: Harney, Éadaoin. Harvard Medical School; Estados Unidos ; Fil: Michel, Megan. Harvard Medical School; Estados Unidos ; Fil: Stewardson, Kristin. Harvard Medical School; Estados Unidos ; Fil: Novak-Forst, Jannine. The Pennsylvania State University; Estados Unidos ; Fil: Capriles, José M. University of California; Estados Unidos ; Fil: Durruty, Marta Alfonso. Kansas State University; Estados Unidos ; Fil: Álvarez, Karina Aranda. Sociedad de Arqueología de la Paz; Bolivia ; Fil: Beresford-Jones, David. University of Cambridge; Reino Unido ; Fil: Burger, Richard. University of Yale; Estados Unidos ; Fil: Cadwallader, Lauren. University of Cambridge; Reino Unido ; Fil: Fujita, Ricardo. Universidad de San Martín de Porres; Perú ; Fil: Isla, Johny. No especifíca; ; Fil: Lau, George. University of East Anglia; Reino Unido ; Fil: Aguirre, Carlos Lémuz. Universidad Mayor de San Andrés; Bolivia ; Fil: LeBlanc, Steven. Harvard University; Estados Unidos ; Fil: Maldonado, Sergio Calla. Universidad Mayor de San Andrés; Bolivia ; Fil: Meddens, Frank. University of Reading; Reino Unido ; Fil: Messineo, Pablo Geronimo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; Argentina ; Fil: Culleton, Brendan J. State University of Pennsylvania; Estados Unidos ; Fil: Harper, Thomas K. State University of Pennsylvania; Estados Unidos ; Fil: Quilter, Jeffrey. Harvard University; Estados Unidos ; Fil: Politis, Gustavo Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; Argentina ; Fil: Rademaker, Kurt. Michigan State University; Estados Unidos ; Fil: Reindel, Markus. State University of Pennsylvania; Estados Unidos ; Fil: Rivera, Mario. Michigan State University; Estados Unidos ; Fil: Salazar, Lucy. University of Cambridge; Estados Unidos ; Fil: Sandoval, José R. Universidad de San Martín de Porres; Perú ; Fil: Santoro, Calogero M. Universidad de Tarapacá; Chile ; Fil: Scheifler, Nahuel Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tandil. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano. Universidad Nacional del Centro de la Provincia de Buenos Aires. Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano; Argentina ; Fil: Standen, Vivien. Universidad de Tarapacá; Chile ; Fil: Barreto, Maria Ines. Museo de Sitio Huaca Pucllana; Perú ; Fil: Flores Espinoza, Isabel. Museo de Sitio Huaca Pucllana; Perú ; Fil: Tomasto Cagigao, Elsa. Pontificia Universidad Católica de Perú; Perú ; Fil: Valverde, Guido. University of Adelaide; Australia ; Fil: Kennett, Douglas J. State University of Pennsylvania; Estados Unidos. University of California; Estados Unidos ; Fil: Cooper, Alan. University of Adelaide; Australia ; Fil: Krause, Johannes. Max Planck Institute For The Science Of Human History; Alemania ; Fil: Haak, Wolfgang. Max Planck Institute For The Science Of Human History; Alemania ; Fil: Llamas, Bastien. University of Adelaide; Australia ; Fil: Reich, David. Harvard University; Estados Unidos. Harvard Medical School; Estados Unidos ; Fil: Fehren Schmitz, Lars. University of California; Estados Unidos
There are many unanswered questions about the population history of the Central and South Central Andes, particularly regarding the impact of large-scale societies, such as the Moche, Wari, Tiwanaku, and Inca. We assembled genome-wide data on 89 individuals dating from ∼9,000-500 years ago (BP), with a particular focus on the period of the rise and fall of state societies. Today's genetic structure began to develop by 5,800 BP, followed by bi-directional gene flow between the North and South Highlands, and between the Highlands and Coast. We detect minimal admixture among neighboring groups between ∼2,000–500 BP, although we do detect cosmopolitanism (people of diverse ancestries living side-by-side) in the heartlands of the Tiwanaku and Inca polities. We also highlight cases of long-range mobility connecting the Andes to Argentina and the Northwest Andes to the Amazon Basin. VIDEO ABSTRACT:
There are many unanswered questions about the population history of the Central and South Central Andes, particularly regarding the impact of large-scale societies, such as the Moche, Wari, Tiwanaku, and Inca. We assembled genome-wide data on 89 individuals dating from ∼9,000-500 years ago (BP), with a particular focus on the period of the rise and fall of state societies. Today's genetic structure began to develop by 5,800 BP, followed by bi-directional gene flow between the North and South Highlands, and between the Highlands and Coast. We detect minimal admixture among neighboring groups between ∼2,000-500 BP, although we do detect cosmopolitanism (people of diverse ancestries living side-by-side) in the heartlands of the Tiwanaku and Inca polities. We also highlight cases of long-range mobility connecting the Andes to Argentina and the Northwest Andes to the Amazon Basin. VIDEO ABSTRACT.